DeSci Bangkok 2024

After an amazing week in Bangkok, while meeting with the DeSci and Earth commons community I finally thought of an answer to Gerard ‘t Hooft‘s question to 零一学生.

When thinking about technological evolution and intelligent machines, Gerard asked us to think about the possibility of AGI-capable robots conducting scientific research/experiments. What would such science look like?

If we cannot understand the robots narratives (models) nor their chatting about measurements (data), how can we tell they are doing research? Can we think of a narrative-agnostic operational definition of scientific research?

When robots/machines use instrumentation to gather data from an experimental set-up and then generate new narratives by feeding the data to algorithms. Wouldn’t that be science? Notice, that as expected, such robots would be capable of construction. This means, such robots will ‘secrete’ technologies as a by-product of their evolution.

An operational definition of scientific research of such sort would also help us build research tools for a decentralized autonomous swarm of intelligent agents which can also instantiate such automated algorithmic research activity. All research narratives (questions too “important” and all other questions about Nature robots might have the interest to ask) are just that, narratives. Technological production on the other hand is a typical outcome of science. If robots produce new technologies, they do it by doing science.

Such a swarm of agents can also be human as it would be in a decentralized group of citizen scientists. These scientists, spanning from all generations, cultures, and walks of life might have non-overlapping narratives. The only common factor is Nature on planet Earth. Its patterns of land use over the surface, and the ecosystem services it provides over space, time, and levels of biological organization to render living conditions over such surface.

DeSci can meet ReFi only at the local level. At the human scale. Such a scale, is where communities assemble (eco-social system) and ecosystems make it possible (services). It is the loci where habitats are generated and re-generated by Nature’s constructor (the Arm). If members of these communities want to conduct scientific research, good tools need to no assumptions about the reasons and interests driving the science. The tools should be relevant regardless.

未来研究的游戏化世界  | The Gamified World of Future Research

Can we do scientific research by playing games with microbes?

Looking forward to our summer school track on biotic games. Inspired by the works of pioneers like Raphael Kim, Roland van Dierendonck and Riedel-Kruse among others we will explore mutating Open Science Hardware into biotic game consoles.

In the mosaic image above, the “game over” subpanel is meant as a homage to these people (see https://www.opencell.bio/news/biotic-gaming-month for image credits).

For this summer X-Camp we plan to explore life over land and under water while using DIY microscopes and computer vision to learn from microbes about collective intelligence.

Kevin’s Thesis manuscript/paper accepted!

Finally! After a lot of work Kevin’s paper Spatial biology of Ising-like synthetic genetic network in BMC Biology!

 

Bi-stable (2-state) synthetic genetic networks running on round E. coli cells are coupled to other neighboring cells in a quasi-2D colony growing on agar using quorum sensing auto-inducer molecules. Left, you see bacterial colonies and on the right we see the Contact Process Ising Model (CPIM), a model of our exsperimental system. Top, Ferromagnetic interactions and Bottom Anti-Ferromagnetic .

COVID break is finish.

Long time not posting lab news. COVID made us focus on other things and we forgot to keep up blogging. After some time in Chilean Patagonia, and then in Szeged Hugary many news have accumulated. Most importantly all people related to the lab made it through the epidemic safely.

Student Graduations

Miles is now a Postdoc in the US and his thesis work “Ecological succession and the competition-colonization trade-off in microbial communities” is published in BMC Biology.

Kevin is also now a Postdoc working at the Active Matter Physics group in University of Chile. Janneke and I are currently in Shenzhen China having the time of our lives; more on this soon!

Science Workshop

At Rural School G45 of Puerto Bertrand in Chilean Patagonia, together with “Los Guardianes del Baker” we researched the collective intelligence of the microbes living in the locality. We sample the environment and build synthetic ecosystems to observe them with Open Science Hardware machines we built together.

More on this story here.

Congratulations Miles!!

Awesome way of starting 2021 while celebrating that Miles was awarded a James S. McDonnell Foundation’s 2020 Postdoctoral Fellowship Award to study Dynamic and Multi-scale systems. The JSMF Fellowship is $200,000 USD to be expended in no less than 2 and no more than 3 years and we have no doubt Miles will make an incredible contribution to science with these funds. Miles, you made us all proud! Now Miles can go wherever he wants to pursue postdoctoral research and continue his great work linking theoretical ecology and bacterial biophysics.